species:   Scscl
pid:       PID1669
parent:    Ssc-milR-145
paralog:   
locus:     NW_001820829.1:262463-262547
matures:   ['UGCUUGCUACGAUCUCCGUGG', 'AUUGAAGGCGUAGUAAAGAUC']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820829.1:262463-262547

16 out of bounds
14 alignments
11 proper strand
11 stranded perfect matches

        ************************                    ************************         
AAGAGUUGUCCAUUGAAGGCGUAGUAAAGAUCAGCUUGUGCGACAAAAGCUCGAUGCUUGCUACGAUCUCCGUGGAACAAGUCAG
..((.((((((((.((.((((((((((..((((((((.........))))).)))..)))))))).)))).)))).)))).))..
------------------------------------------------------UGCUUGCUACGAUCUCCGUGG---------- l=21 a=1 c
-----------AUUGAAGGCGUAGUAAAGAUC----------------------------------------------------- l=21 a=0 c*
--------------------------------------UGCGACAAAAGCUCGAUGCUUG------------------------- l=22 a=4 ma
-----------AUUGAAGGCGUAGUAAAGAUC----------------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------UACGAUCUCCGUGGAACAAGU--- l=21 a=1 
------------------------------------------------------UGCUUGCUACGAUCUCCGUGG---------- l=21 a=1 (c)
------------------------------------------------------UGCUUGCUACGAUCUCCGUGGA--------- l=22 a=1 
------------------------------------------------------UGCUUGCUACGAUCUCCGUGGAACA------ l=25 a=1 
--------------------------------------------------UCGAUGCUUGCUACGAUCUCCG------------- l=22 a=1 
--------------------------------------UGCGACAAAAGCUCGAUGCUUG------------------------- l=22 a=4 (ma)
--------------------------------------UGCGACAAAAGCUCGAUGCUUGC------------------------ l=23 a=1 
------------------------------------UGUGCGACAAAAGCUCGAUG----------------------------- l=20 a=1 

mb-00010
ax-1011011
ku-01
ss-111110111100
fn-101
